Procs for dealing with sequences of Nucleotides

Imports

Procs

func complement[T: AnyNucleotide](s: seq[T]): seq[T]

Returns the complement of a sequence of nucleotides. Source Edit

func complement[T: AnyNucleotide](s: var seq[T])

Replaces a sequence of nucleotides with the complement. Source Edit

func reverseComplement[T: AnyNucleotide](s: seq[T]): seq[T]

Returns the reverse complement of a sequence of nucleotides. Source Edit

func reverseComplement[T: AnyNucleotide](s: var seq[T])

Replace a sequence of nucleotides with the reverse complement. Source Edit

func toCharSeq[T](data: seq[T]): seq[char]

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proc toSeq(data: seq[char]; typ: typedesc): seq[typ:type]

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proc toSeq(data: string; typ: typedesc): seq[typ:type]

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func toString[T](data: seq[T]): string

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proc translate[T: AnyNucleotide](s: seq[T]; code: GeneticCode = gCode1): seq[
    AminoAcid]

Translate sequence of nucleotides to sequence of amino acid.

See documentation for GeneticCode here

Source Edit